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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13897-RA through 18771 annotations produced 1 hits



(CG13897):

Annotation Number : CG13897
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035160
Gbrowse : chr3L:737676-739120 (-) // 100.0 //
Probeset : 1641084_at
Accessions : protein= NP_612057;, nucleotide= NM_138213;
Interpro : 0003677 // DNA binding // inferred from electronic annotation
FlyMine data for FBgn0035160.
TRiP has 2 RNAi stocks for FBgn0035160 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035160 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain38 ± 04 of 4 0.60None
Head39 ± 24 of 4 0.60None
Eye83 ± 74 of 4 1.32None
Thoracicoabdominal ganglion54 ± 14 of 4 0.90None
Salivary gland70 ± 64 of 4 1.11None
Crop71 ± 34 of 4 1.10None
Midgut31 ± 24 of 4 0.50Down
Tubule55 ± 14 of 4 0.90Down
Hindgut39 ± 14 of 4 0.60None
Heart104 ± 54 of 4 1.66Up
Fat body52 ± 74 of 4 0.84None
Ovary130 ± 54 of 4 2.10Up
Testis24 ± 44 of 4 0.40Down
Male accessory glands637 ± 284 of 410.10Up
Virgin spermatheca56 ± 34 of 4 0.89None
Mated spermatheca41 ± 64 of 4 0.66None
Adult carcass47 ± 64 of 4 0.80None
Larval CNS163 ± 174 of 4 2.60Up
Larval Salivary gland27 ± 24 of 4 0.44Down
Larval midgut24 ± 44 of 4 0.39Down
Larval tubule45 ± 54 of 4 0.70None
Larval hindgut26 ± 14 of 4 0.43Down
Larval fat body272 ± 204 of 4 4.30Up
Larval trachea138 ± 154 of 4 2.20Up
Larval carcass42 ± 54 of 4 0.67None
S2 cells (growing)12 ± 03 of 4 0.20Down
Whole fly62 ± 84 of 4

Looking for CG13897-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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