FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13900-RA through 18771 annotations produced 1 hits

splicing factor 3b subunit 3 (CG13900):

Annotation Number : CG13900
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035162
Gbrowse : chr3L:826709-833402 (-) // 100.0 //
Probeset : 1633394_a_at
Accessions : protein= NP_612059; /// NP_728546;, nucleotide= NM_138215; /// NM_167842;
Pathway : via spliceosome // inferred by curator /// 0000398 // nuclear mRNA splicing
Interpro : via spliceosome // inferred from sequence or structural similarity /// 0007052 // mitotic spindle organization // infer
FlyMine data for FBgn0035162.
BDGP gene expression has embryonic in situ data for CG13900: 15 pix of staining in 15 body parts.
BioGrid reports that CG13900 interacts with CG2830 CG5642 .
TRiP has 1 RNAi stocks for FBgn0035162 available for purchase.
VDRC has 2 RNAi stocks for FBgn0035162 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	157 ± 1	4 of 4	0.40	Down
Head	137 ± 7	4 of 4	0.40	Down
Eye	83 ± 4	4 of 4	0.22	Down
Thoracicoabdominal ganglion	119 ± 3	4 of 4	0.30	Down
Salivary gland	272 ± 10	4 of 4	0.72	Down
Crop	199 ± 7	4 of 4	0.50	Down
Midgut	204 ± 6	4 of 4	0.50	Down
Tubule	219 ± 27	4 of 4	0.60	Down
Hindgut	143 ± 5	4 of 4	0.40	Down
Heart	118 ± 7	4 of 4	0.31	Down
Fat body	188 ± 22	4 of 4	0.50	Down
Ovary	601 ± 12	4 of 4	1.60	Up
Testis	57 ± 2	4 of 4	0.20	Down
Male accessory glands	272 ± 5	4 of 4	0.70	Down
Virgin spermatheca	225 ± 11	4 of 4	0.59	Down
Mated spermatheca	353 ± 8	4 of 4	0.93	None
Adult carcass	133 ± 7	4 of 4	0.40	Down
Larval CNS	719 ± 18	4 of 4	1.90	Up
Larval Salivary gland	559 ± 29	4 of 4	1.48	Up
Larval midgut	203 ± 22	4 of 4	0.54	Down
Larval tubule	96 ± 5	4 of 4	0.30	Down
Larval hindgut	352 ± 41	4 of 4	0.93	None
Larval fat body	101 ± 7	4 of 4	0.30	Down
Larval trachea	540 ± 101	4 of 4	1.43	Up
Larval carcass	426 ± 75	4 of 4	1.12	None
S2 cells (growing)	893 ± 25	4 of 4	2.35	Up
Whole fly	379 ± 14	4 of 4

Looking for CG13900-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720