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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13902-RA through 18771 annotations produced 1 hits



(CG13902):

Annotation Number : CG13902
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035166
Gbrowse : chr3L:839979-841361 (-) // 100.0 //
Probeset : 1632198_at
Accessions : protein= NP_612063;, nucleotide= NM_138219;
FlyMine data for FBgn0035166.
TRiP has 1 RNAi stocks for FBgn0035166 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 34 of 4 1.30Up
Head37 44 of 4 1.20None
Eye52 04 of 4 1.68Up
Thoracicoabdominal ganglion62 44 of 4 2.00Up
Salivary gland72 34 of 4 2.31Up
Crop117 164 of 4 3.70Up
Midgut53 64 of 4 1.70Up
Tubule44 04 of 4 1.40Up
Hindgut78 54 of 4 2.50Up
Heart42 04 of 4 1.37Up
Fat body45 104 of 4 1.45None
Ovary80 94 of 4 2.60Up
Testis14 10 of 4 0.50Down
Male accessory glands43 44 of 4 1.40None
Virgin spermatheca28 14 of 4 0.90None
Mated spermatheca30 34 of 4 0.97None
Adult carcass32 64 of 4 1.00None
Larval CNS84 124 of 4 2.69Up
Larval Salivary gland132 44 of 4 4.23Up
Larval midgut49 14 of 4 1.59Up
Larval tubule66 14 of 4 2.10Up
Larval hindgut99 54 of 4 3.17Up
Larval fat body42 34 of 4 1.40Up
Larval trachea91 94 of 4 2.92Up
Larval carcass56 54 of 4 1.80Up
S2 cells (growing)62 14 of 4 2.01Up
Whole fly31 24 of 4

Looking for CG13902-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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