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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13905-RA through 18771 annotations produced 1 hits



(CG13905):

Annotation Number : CG13905
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035176
Gbrowse : chr3L:902930-903614 (+) // 100.0 //
Probeset : 1637224_at
Accessions : protein= NP_612072;, nucleotide= NM_138228;
FlyMine data for FBgn0035176.
VDRC has 1 RNAi stocks for FBgn0035176 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head3 ± 10 of 4 0.20Down
Eye3 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.20Down
Salivary gland22 ± 60 of 4 0.98None
Crop6 ± 10 of 4 0.30Down
Midgut10 ± 01 of 4 0.50Down
Tubule1534 ± 2414 of 467.40Up
Hindgut6 ± 11 of 4 0.30Down
Heart29 ± 163 of 4 1.31None
Fat body14 ± 81 of 4 0.63None
Ovary2 ± 00 of 4 0.10Down
Testis3 ± 00 of 4 0.20Down
Male accessory glands8 ± 20 of 4 0.40Down
Virgin spermatheca9 ± 51 of 4 0.43None
Mated spermatheca6 ± 00 of 4 0.29Down
Adult carcass7 ± 30 of 4 0.30Down
Larval CNS7 ± 12 of 4 0.32Down
Larval Salivary gland6 ± 30 of 4 0.30Down
Larval midgut11 ± 12 of 4 0.51Down
Larval tubule2877 ± 2034 of 4126.40Up
Larval hindgut226 ± 364 of 4 9.94Up
Larval fat body17 ± 62 of 4 0.80None
Larval trachea4 ± 11 of 4 0.20Down
Larval carcass24 ± 64 of 4 1.07None
S2 cells (growing)2 ± 00 of 4 0.12Down
Whole fly22 ± 34 of 4

Looking for CG13905-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime