Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13906-RA through 18771 annotations produced 1 hits



nerfin 1 (nerfin-1):

Annotation Number : CG13906
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028999
Gbrowse : chr3L:909138-912325 (+) // 99.87 //
Probeset : 1634039_at
Accessions : protein= NP_524783;, nucleotide= NM_080044;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003702 // RNA polymerase II transcription fa
FlyMine data for FBgn0028999.
BDGP gene expression has embryonic in situ data for nerfin-1: 36 pix of staining in 11 body parts.
BioGrid reports that CG13906 interacts with CG8544 CG9218 .
TRiP has 1 RNAi stocks for FBgn0028999 available for purchase.
VDRC has 2 RNAi stocks for FBgn0028999 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 02 of 4 0.60None
Head2 ± 10 of 4 0.30Down
Eye4 ± 01 of 4 0.42Down
Thoracicoabdominal ganglion6 ± 11 of 4 0.60None
Salivary gland6 ± 20 of 4 0.62None
Crop7 ± 11 of 4 0.70None
Midgut5 ± 01 of 4 0.50None
Tubule4 ± 00 of 4 0.50Down
Hindgut4 ± 10 of 4 0.40Down
Heart4 ± 00 of 4 0.43Down
Fat body5 ± 13 of 4 0.56None
Ovary2 ± 00 of 4 0.20Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands5 ± 10 of 4 0.50None
Virgin spermatheca4 ± 03 of 4 0.42Down
Mated spermatheca6 ± 02 of 4 0.58None
Adult carcass5 ± 20 of 4 0.50None
Larval CNS1318 ± 1504 of 4124.65Up
Larval Salivary gland4 ± 00 of 4 0.44Down
Larval midgut6 ± 02 of 4 0.57None
Larval tubule3 ± 10 of 4 0.40Down
Larval hindgut3 ± 10 of 4 0.36Down
Larval fat body9 ± 20 of 4 0.90None
Larval trachea2 ± 10 of 4 0.22Down
Larval carcass4 ± 11 of 4 0.42Down
S2 cells (growing)2 ± 00 of 4 0.20Down
Whole fly10 ± 13 of 4

Looking for CG13906-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime