Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13919-RA through 18771 annotations produced 1 hits



(CG13919):

Annotation Number : CG13919
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035248
Gbrowse : chr3L:1645541-1645937 (+) // 100.0 //
Probeset : 1639600_at
Accessions : protein= NP_647637;, nucleotide= NM_139380;
FlyMine data for FBgn0035248.
VDRC has 3 RNAi stocks for FBgn0035248 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain69 ± 34 of 4 1.10None
Head69 ± 54 of 4 1.10None
Eye83 ± 54 of 4 1.37Up
Thoracicoabdominal ganglion69 ± 44 of 4 1.10None
Salivary gland132 ± 54 of 4 2.19Up
Crop102 ± 84 of 4 1.70Up
Midgut101 ± 24 of 4 1.70Up
Tubule117 ± 44 of 4 1.90Up
Hindgut117 ± 44 of 4 1.90Up
Heart97 ± 54 of 4 1.61Up
Fat body106 ± 134 of 4 1.76Up
Ovary64 ± 24 of 4 1.10None
Testis33 ± 24 of 4 0.50Down
Male accessory glands226 ± 54 of 4 3.70Up
Virgin spermatheca98 ± 54 of 4 1.62Up
Mated spermatheca105 ± 64 of 4 1.73Up
Adult carcass93 ± 64 of 4 1.50Up
Larval CNS80 ± 84 of 4 1.32Up
Larval Salivary gland225 ± 54 of 4 3.72Up
Larval midgut74 ± 54 of 4 1.22None
Larval tubule110 ± 34 of 4 1.80Up
Larval hindgut74 ± 44 of 4 1.22None
Larval fat body138 ± 144 of 4 2.30Up
Larval trachea116 ± 184 of 4 1.92Up
Larval carcass74 ± 64 of 4 1.22None
S2 cells (growing)132 ± 54 of 4 2.17Up
Whole fly60 ± 34 of 4

Looking for CG13919-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime