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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13920-RA through 18771 annotations produced 1 hits



(CG13920):

Annotation Number : CG13920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025712
Gbrowse : chr3L:1648942-1651498 (+) // 100.0 //
Probeset : 1628678_at
Accessions : protein= NP_647639;, nucleotide= NM_139382;
FlyMine data for FBgn0025712.
BDGP gene expression has embryonic in situ data for BEST:CK00246: 15 pix of staining in 5 body parts.
VDRC has 3 RNAi stocks for FBgn0025712 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain844 ± 334 of 4 5.00Up
Head415 ± 194 of 4 2.50Up
Eye164 ± 64 of 4 0.98None
Thoracicoabdominal ganglion859 ± 304 of 4 5.10Up
Salivary gland4 ± 20 of 4 0.03Down
Crop306 ± 94 of 4 1.80Up
Midgut81 ± 54 of 4 0.50Down
Tubule12 ± 10 of 4 0.10Down
Hindgut136 ± 24 of 4 0.80Down
Heart361 ± 304 of 4 2.16Up
Fat body10 ± 70 of 4 0.06Down
Ovary13 ± 11 of 4 0.10Down
Testis23 ± 24 of 4 0.10Down
Male accessory glands91 ± 44 of 4 0.50Down
Virgin spermatheca7 ± 10 of 4 0.05Down
Mated spermatheca15 ± 00 of 4 0.09Down
Adult carcass563 ± 364 of 4 3.40Up
Larval CNS819 ± 684 of 4 4.90Up
Larval Salivary gland6 ± 10 of 4 0.04Down
Larval midgut50 ± 34 of 4 0.30Down
Larval tubule13 ± 10 of 4 0.10Down
Larval hindgut85 ± 54 of 4 0.51Down
Larval fat body7 ± 20 of 4 0.00Down
Larval trachea21 ± 123 of 4 0.13Down
Larval carcass536 ± 514 of 4 3.21Up
S2 cells (growing)4 ± 10 of 4 0.03Down
Whole fly167 ± 94 of 4

Looking for CG13920-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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