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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13924-RA through 18771 annotations produced 1 hits


Annotation Number : CG13924
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035286
Gbrowse : chr3L:1870018-1871564 (+) // 100.0 //
Probeset : 1635158_at
Accessions : protein= NP_647672;, nucleotide= NM_139415;
FlyMine data for FBgn0035286.
VDRC has 3 RNAi stocks for FBgn0035286 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 2.60None
Head4 10 of 4 1.50None
Eye6 10 of 4 2.27None
Thoracicoabdominal ganglion7 10 of 4 2.70Up
Salivary gland12 20 of 4 4.42Up
Crop1 00 of 4 0.60None
Midgut6 10 of 4 2.30None
Tubule2 00 of 4 0.80None
Hindgut5 10 of 4 1.90None
Heart1 00 of 4 0.39None
Fat body5 10 of 4 1.85None
Ovary2 00 of 4 0.80None
Testis1 00 of 4 0.30None
Male accessory glands8 30 of 4 3.10None
Virgin spermatheca1 00 of 4 0.51None
Mated spermatheca1 00 of 4 0.66None
Adult carcass4 20 of 4 1.50None
Larval CNS2 10 of 4 0.96None
Larval Salivary gland1 00 of 4 0.55None
Larval midgut11 10 of 4 4.12Up
Larval tubule16 62 of 4 5.70None
Larval hindgut70 154 of 424.96Up
Larval fat body1 00 of 4 0.50None
Larval trachea2 10 of 4 0.91None
Larval carcass3 10 of 4 1.16None
S2 cells (growing)5 10 of 4 1.93None
Whole fly2 10 of 4

Looking for CG13924-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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