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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13927-RA through 18771 annotations produced 1 hits



gamma-glutamyl carboxylase (GC):

Annotation Number : CG13927
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035245
Gbrowse : chr3L:1623177-1629298 (-) // 100.0 //
Probeset : 1640524_at
Accessions : protein= NP_001163323; /// NP_523885;, nucleotide= NM_001169852; /// NM_079161;
Interpro : 0008488 // gamma-glutamyl carboxylase activity // inferred from direct assay /// 0008488 // gamma-glutamyl carboxylase a
FlyMine data for FBgn0035245.
Homophila reports that CG13927 is a close match (2e-113) to human gene GGCX (NP_000812), a gene associated with Pseudoxanthoma elasticum-like disorder with multiple coagulation factor deficiency, 610842 (3);Vitamin K-dependent coagulation defect, 277450 (3).
VDRC has 4 RNAi stocks for FBgn0035245 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain340 ± 124 of 457.90Up
Head42 ± 64 of 4 7.30Up
Eye8 ± 11 of 4 1.47None
Thoracicoabdominal ganglion287 ± 164 of 448.90Up
Salivary gland5 ± 20 of 4 0.98None
Crop3 ± 10 of 4 0.70None
Midgut3 ± 10 of 4 0.60None
Tubule1 ± 00 of 4 0.30Down
Hindgut3 ± 00 of 4 0.50None
Heart7 ± 01 of 4 1.33None
Fat body2 ± 20 of 4 0.49None
Ovary3 ± 10 of 4 0.50None
Testis8 ± 04 of 4 1.40None
Male accessory glands2 ± 10 of 4 0.40None
Virgin spermatheca3 ± 10 of 4 0.53None
Mated spermatheca2 ± 00 of 4 0.40Down
Adult carcass1 ± 00 of 4 0.20Down
Larval CNS136 ± 104 of 423.27Up
Larval Salivary gland2 ± 10 of 4 0.49None
Larval midgut8 ± 01 of 4 1.45None
Larval tubule1 ± 10 of 4 0.30Down
Larval hindgut2 ± 10 of 4 0.48None
Larval fat body1 ± 00 of 4 0.20Down
Larval trachea0 ± 00 of 4 0.08Down
Larval carcass4 ± 00 of 4 0.70None
S2 cells (growing)2 ± 00 of 4 0.50None
Whole fly5 ± 01 of 4

Looking for CG13927-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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