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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13928-RA through 18771 annotations produced 1 hits



(CG13928):

Annotation Number : CG13928
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035246
Gbrowse : chr3L:1625790-1628377 (-) // 100.0 //
Probeset : 1637150_at
Accessions : protein= NP_647635;, nucleotide= NM_139378;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0035246.
BDGP gene expression has embryonic in situ data for CG13928: 14 pix of staining in 8 body parts.
BioGrid reports that CG13928 interacts with CG2079 CG2199 CG5576 CG7467 .
TRiP has 1 RNAi stocks for FBgn0035246 available for purchase.
VDRC has 3 RNAi stocks for FBgn0035246 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1846 ± 464 of 421.40Up
Head862 ± 304 of 410.00Up
Eye2147 ± 984 of 424.87Up
Thoracicoabdominal ganglion2105 ± 254 of 424.40Up
Salivary gland4 ± 20 of 4 0.06Down
Crop4 ± 10 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule0 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart7 ± 00 of 4 0.08Down
Fat body2 ± 10 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis27 ± 14 of 4 0.30Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.01Down
Mated spermatheca0 ± 00 of 4 0.01Down
Adult carcass41 ± 24 of 4 0.50Down
Larval CNS1769 ± 1164 of 420.50Up
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut2 ± 10 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body2 ± 00 of 4 0.00Down
Larval trachea26 ± 281 of 4 0.31Down
Larval carcass14 ± 11 of 4 0.17Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly86 ± 34 of 4

Looking for CG13928-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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