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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13939-RA through 18771 annotations produced 1 hits



Odorant-binding protein 50e (Obp50e):

Annotation Number : CG13939
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033931
Gbrowse : chr2R:10262076-10262648 (-) // 100.0 //
Probeset : 1630462_at
Accessions : protein= NP_610959;, nucleotide= NM_137115;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded /// 000
FlyMine data for FBgn0033931.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.60None
Head4 ± 00 of 4 2.00None
Eye2 ± 10 of 4 0.99None
Thoracicoabdominal ganglion4 ± 00 of 4 2.00None
Salivary gland2 ± 00 of 4 0.96None
Crop3 ± 10 of 4 1.80None
Midgut3 ± 10 of 4 1.80None
Tubule3 ± 10 of 4 1.60None
Hindgut3 ± 10 of 4 1.70None
Heart3 ± 00 of 4 1.68None
Fat body6 ± 20 of 4 3.15None
Ovary1 ± 00 of 4 0.80None
Testis7 ± 04 of 4 3.80Up
Male accessory glands3 ± 10 of 4 1.60None
Virgin spermatheca4 ± 11 of 4 2.34None
Mated spermatheca5 ± 11 of 4 2.49None
Adult carcass2 ± 10 of 4 1.20None
Larval CNS1 ± 00 of 4 0.83None
Larval Salivary gland4 ± 00 of 4 1.93None
Larval midgut7 ± 10 of 4 3.68Up
Larval tubule4 ± 10 of 4 2.00None
Larval hindgut5 ± 10 of 4 2.68None
Larval fat body6 ± 10 of 4 3.10None
Larval trachea5 ± 00 of 4 2.85Up
Larval carcass9 ± 00 of 4 4.73Up
S2 cells (growing)6 ± 11 of 4 3.13None
Whole fly2 ± 00 of 4

Looking for CG13939-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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