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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1394-RA through 18771 annotations produced 1 hits


(CG1394):

Annotation Number : CG1394
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030277
Gbrowse : chrX:11063854-11064681 (-) // 100.0 //
Probeset : 1633930_at
Accessions : protein= NP_572696;, nucleotide= NM_132468;
FlyMine data for FBgn0030277.
BDGP gene expression has embryonic in situ data for CG1394: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0030277 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head6 ± 11 of 4 0.00Down
Eye2 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.01Down
Crop4 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body4 ± 20 of 4 0.01Down
Ovary2 ± 10 of 4 0.00Down
Testis2767 ± 744 of 4 6.20Up
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca1 ± 00 of 4 0.00Down
Mated spermatheca5 ± 10 of 4 0.01Down
Adult carcass12 ± 41 of 4 0.00Down
Larval CNS3 ± 20 of 4 0.01Down
Larval Salivary gland4 ± 10 of 4 0.01Down
Larval midgut4 ± 10 of 4 0.01Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 11 of 4 0.01Down
Larval fat body469 ± 2484 of 4 1.00None
Larval trachea36 ± 174 of 4 0.08Down
Larval carcass5 ± 12 of 4 0.01Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly449 ± 174 of 4

Looking for CG1394-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime