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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13941-RA through 18771 annotations produced 1 hits



CG13941 (Arc2):

Annotation Number : CG13941
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033928
Gbrowse : chr2R:10249448-10250330 (+) // 100.0 //
Probeset : 1632639_at
Accessions : protein= NP_610956;, nucleotide= NM_137112;
FlyMine data for FBgn0033928.
BDGP gene expression has embryonic in situ data for CG13941: 4 pix of staining in 1 body parts.
BioGrid reports that CG13941 interacts with CG4818 .
VDRC has 1 RNAi stocks for FBgn0033928 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain27 24 of 4 0.50Down
Head33 24 of 4 0.70Down
Eye13 13 of 4 0.27Down
Thoracicoabdominal ganglion47 44 of 4 0.90None
Salivary gland20 20 of 4 0.40Down
Crop49 14 of 4 1.00None
Midgut147 54 of 4 2.90Up
Tubule70 134 of 4 1.40None
Hindgut39 14 of 4 0.80Down
Heart84 84 of 4 1.67Up
Fat body36 73 of 4 0.73Down
Ovary62 44 of 4 1.30None
Testis4 20 of 4 0.10Down
Male accessory glands106 84 of 4 2.10Up
Virgin spermatheca34 24 of 4 0.69Down
Mated spermatheca53 84 of 4 1.07None
Adult carcass49 24 of 4 1.00None
Larval CNS30 34 of 4 0.60Down
Larval Salivary gland65 64 of 4 1.30None
Larval midgut136 174 of 4 2.72Up
Larval tubule91 154 of 4 1.80None
Larval hindgut85 54 of 4 1.70Up
Larval fat body16 20 of 4 0.30Down
Larval trachea101 114 of 4 2.01Up
Larval carcass129 194 of 4 2.58Up
S2 cells (growing)248 94 of 4 4.94Up
Whole fly50 34 of 4

Looking for CG13941-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime