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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13942-RA through 18771 annotations produced 1 hits



CG13942 (Shroom):

Annotation Number : CG13942
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085408
Gbrowse : chr2R:10213330-10217323 (+) // 100.0 //
Probeset : 1627487_at
Accessions : protein= NP_001097307; /// NP_610952; /// NP_725378;, nucleotide= NM_001103837; /// NM_137108; /// NM_166047;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from sequence or str
Interpro : 0003779 // actin binding // inferred from sequence or structural similarity
FlyMine data for FBgn0085408.
TRiP has 1 RNAi stocks for FBgn0085408 available for purchase.
VDRC has 7 RNAi stocks for FBgn0085408 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head3 ± 10 of 4 0.50None
Eye1 ± 00 of 4 0.30None
Thoracicoabdominal ganglion4 ± 10 of 4 0.80None
Salivary gland16 ± 30 of 4 2.72Up
Crop3 ± 10 of 4 0.60None
Midgut9 ± 10 of 4 1.60None
Tubule6 ± 11 of 4 1.10None
Hindgut3 ± 00 of 4 0.50None
Heart3 ± 10 of 4 0.56None
Fat body6 ± 30 of 4 1.10None
Ovary2 ± 00 of 4 0.30None
Testis4 ± 00 of 4 0.70None
Male accessory glands18 ± 33 of 4 3.00Up
Virgin spermatheca4 ± 10 of 4 0.77None
Mated spermatheca7 ± 01 of 4 1.31None
Adult carcass6 ± 10 of 4 1.00None
Larval CNS5 ± 20 of 4 0.93None
Larval Salivary gland8 ± 30 of 4 1.34None
Larval midgut4 ± 10 of 4 0.81None
Larval tubule21 ± 34 of 4 3.50Up
Larval hindgut5 ± 10 of 4 0.97None
Larval fat body5 ± 30 of 4 1.00None
Larval trachea4 ± 30 of 4 0.67None
Larval carcass8 ± 10 of 4 1.32None
S2 cells (growing)6 ± 10 of 4 1.02None
Whole fly6 ± 10 of 4

Looking for CG13942-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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