FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13950-RA through 18771 annotations produced 1 hits

(CG13950):

Annotation Number : CG13950
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031289
Gbrowse : chr2L:860320-861696 (+) // 100.0 //
Probeset : 1635519_at
Accessions : protein= NP_608553;, nucleotide= NM_134709;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0005529 // sugar binding // inferred from electroni
FlyMine data for FBgn0031289.
BioGrid reports that CG13950 interacts with CG15881 CG17294 .
VDRC has 2 RNAi stocks for FBgn0031289 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 2	0 of 4	1.20	None
Head	34 ± 3	4 of 4	8.10	Up
Eye	2 ± 1	0 of 4	0.69	None
Thoracicoabdominal ganglion	8 ± 2	2 of 4	2.00	None
Salivary gland	147 ± 8	4 of 4	35.35	Up
Crop	1 ± 1	0 of 4	0.40	None
Midgut	30 ± 2	2 of 4	7.40	Up
Tubule	1 ± 0	0 of 4	0.30	Down
Hindgut	1 ± 0	0 of 4	0.30	None
Heart	0 ± 0	0 of 4	0.17	None
Fat body	3 ± 4	0 of 4	0.87	None
Ovary	0 ± 0	0 of 4	0.10	None
Testis	2 ± 0	0 of 4	0.60	None
Male accessory glands	91 ± 5	4 of 4	21.80	Up
Virgin spermatheca	19 ± 1	3 of 4	4.68	Up
Mated spermatheca	20 ± 5	2 of 4	4.96	Up
Adult carcass	3 ± 1	0 of 4	0.80	None
Larval CNS	0 ± 0	0 of 4	0.21	None
Larval Salivary gland	237 ± 12	4 of 4	56.76	Up
Larval midgut	19 ± 1	1 of 4	4.64	Up
Larval tubule	0 ± 0	0 of 4	0.20	None
Larval hindgut	0 ± 0	0 of 4	0.13	None
Larval fat body	1 ± 0	0 of 4	0.30	None
Larval trachea	0 ± 0	0 of 4	0.12	None
Larval carcass	1 ± 0	0 of 4	0.31	None
S2 cells (growing)	0 ± 0	0 of 4	0.10	None
Whole fly	4 ± 1	0 of 4

Looking for CG13950-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720