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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13951-RA through 18771 annotations produced 1 hits



lethal (2) k10201 (l(2)k10201):

Annotation Number : CG13951
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0016970
Gbrowse : chr2R:5286593-5287259 (+) // 100.0 //
Probeset : 1631525_at
Accessions : protein= NP_788296;, nucleotide= NM_176116;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008270 // zinc ion binding // inferred from electr
FlyMine data for FBgn0016970.
BioGrid reports that CG13951 interacts with CG15443 .
VDRC has 3 RNAi stocks for FBgn0016970 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 24 of 4 0.50Down
Head24 ± 14 of 4 0.30Down
Eye35 ± 24 of 4 0.44Down
Thoracicoabdominal ganglion32 ± 14 of 4 0.40Down
Salivary gland25 ± 61 of 4 0.32Down
Crop37 ± 24 of 4 0.50Down
Midgut21 ± 14 of 4 0.30Down
Tubule20 ± 24 of 4 0.30Down
Hindgut25 ± 04 of 4 0.30Down
Heart34 ± 54 of 4 0.43Down
Fat body23 ± 43 of 4 0.29Down
Ovary152 ± 54 of 4 1.90Up
Testis141 ± 44 of 4 1.80Up
Male accessory glands71 ± 14 of 4 0.90None
Virgin spermatheca10 ± 04 of 4 0.13Down
Mated spermatheca17 ± 14 of 4 0.22Down
Adult carcass22 ± 14 of 4 0.30Down
Larval CNS58 ± 94 of 4 0.73Down
Larval Salivary gland33 ± 34 of 4 0.42Down
Larval midgut16 ± 13 of 4 0.20Down
Larval tubule25 ± 44 of 4 0.30Down
Larval hindgut19 ± 14 of 4 0.25Down
Larval fat body31 ± 62 of 4 0.40Down
Larval trachea64 ± 34 of 4 0.80Down
Larval carcass32 ± 14 of 4 0.40Down
S2 cells (growing)51 ± 14 of 4 0.64Down
Whole fly79 ± 34 of 4

Looking for CG13951-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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