Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13955-RA through 18771 annotations produced 1 hits



(CG13955):

Annotation Number : CG13955
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033412
Gbrowse : chr2R:5309922-5311127 (-) // 100.0 //
Probeset : 1631706_at
Accessions : protein= NP_610486;, nucleotide= NM_136642;
FlyMine data for FBgn0033412.
BioGrid reports that CG13955 interacts with CG8362 .
VDRC has 4 RNAi stocks for FBgn0033412 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.00None
Head2 ± 10 of 4 1.60None
Eye3 ± 10 of 4 1.91None
Thoracicoabdominal ganglion2 ± 00 of 4 1.20None
Salivary gland3 ± 10 of 4 1.86None
Crop1 ± 00 of 4 0.80None
Midgut0 ± 00 of 4 0.40None
Tubule1 ± 00 of 4 0.80Down
Hindgut1 ± 00 of 4 1.10None
Heart0 ± 00 of 4 0.46None
Fat body2 ± 10 of 4 1.20None
Ovary1 ± 00 of 4 0.60None
Testis2 ± 00 of 4 1.40None
Male accessory glands5 ± 20 of 4 3.10None
Virgin spermatheca1 ± 00 of 4 0.75None
Mated spermatheca1 ± 00 of 4 0.95None
Adult carcass1 ± 00 of 4 1.20None
Larval CNS2 ± 00 of 4 1.46None
Larval Salivary gland5 ± 20 of 4 3.28None
Larval midgut1 ± 00 of 4 0.65None
Larval tubule1 ± 00 of 4 0.90None
Larval hindgut1 ± 00 of 4 0.60None
Larval fat body8 ± 10 of 4 5.40Up
Larval trachea1 ± 10 of 4 0.83None
Larval carcass1 ± 00 of 4 0.74None
S2 cells (growing)0 ± 00 of 4 0.51None
Whole fly1 ± 00 of 4

Looking for CG13955-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime