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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13969-RA through 18771 annotations produced 1 hits



brain washing (bwa):

Annotation Number : CG13969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045064
Gbrowse : chr2L:20066369-20073725 (+) // 100.0 //
Probeset : 1625491_at
Accessions : protein= NP_610020;, nucleotide= NM_136176;
Pathway : 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0016020 // membrane // inferred
Interpro : "0016787 // hydrolase activity // inferred from electronic annotation /// 0016811 // hydrolase activity
FlyMine data for FBgn0045064.
BDGP gene expression has embryonic in situ data for bwa: 36 pix of staining in 25 body parts.
TRiP has 2 RNAi stocks for FBgn0045064 available for purchase.
VDRC has 3 RNAi stocks for FBgn0045064 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain325 ± 64 of 4 3.10Up
Head120 ± 54 of 4 1.20None
Eye96 ± 34 of 4 0.92None
Thoracicoabdominal ganglion329 ± 74 of 4 3.20Up
Salivary gland157 ± 94 of 4 1.51Up
Crop23 ± 34 of 4 0.20Down
Midgut223 ± 104 of 4 2.10Up
Tubule27 ± 14 of 4 0.30Down
Hindgut37 ± 24 of 4 0.40Down
Heart93 ± 114 of 4 0.90None
Fat body160 ± 184 of 4 1.54Up
Ovary64 ± 34 of 4 0.60Down
Testis107 ± 34 of 4 1.00None
Male accessory glands2048 ± 924 of 419.60Up
Virgin spermatheca172 ± 104 of 4 1.65Up
Mated spermatheca159 ± 104 of 4 1.53Up
Adult carcass114 ± 104 of 4 1.10None
Larval CNS59 ± 54 of 4 0.57Down
Larval Salivary gland24 ± 14 of 4 0.24Down
Larval midgut1272 ± 1474 of 412.20Up
Larval tubule158 ± 164 of 4 1.50Up
Larval hindgut161 ± 384 of 4 1.55None
Larval fat body31 ± 33 of 4 0.30Down
Larval trachea24 ± 44 of 4 0.24Down
Larval carcass38 ± 124 of 4 0.37Down
S2 cells (growing)49 ± 14 of 4 0.47Down
Whole fly104 ± 84 of 4

Looking for CG13969-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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