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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13982-RA through 18771 annotations produced 1 hits



(CG13982):

Annotation Number : CG13982
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031811
Gbrowse : chr2L:6412703-6414071 (+) // 100.0 //
Probeset : 1637777_at
Accessions : protein= NP_609025;, nucleotide= NM_135181;
FlyMine data for FBgn0031811.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 14 of 4 4.70Up
Head2 ± 00 of 4 0.60None
Eye2 ± 10 of 4 0.73None
Thoracicoabdominal ganglion16 ± 23 of 4 4.50Up
Salivary gland5 ± 20 of 4 1.44None
Crop2 ± 10 of 4 0.80None
Midgut1 ± 00 of 4 0.40None
Tubule2 ± 00 of 4 0.80None
Hindgut5 ± 00 of 4 1.60None
Heart2 ± 00 of 4 0.73None
Fat body2 ± 20 of 4 0.59None
Ovary1 ± 00 of 4 0.50None
Testis1 ± 00 of 4 0.50None
Male accessory glands3 ± 10 of 4 1.00None
Virgin spermatheca1 ± 00 of 4 0.30Down
Mated spermatheca1 ± 00 of 4 0.32Down
Adult carcass5 ± 00 of 4 1.40None
Larval CNS0 ± 00 of 4 0.20Down
Larval Salivary gland2 ± 00 of 4 0.74None
Larval midgut3 ± 20 of 4 0.88None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut2 ± 00 of 4 0.59None
Larval fat body4 ± 20 of 4 1.10None
Larval trachea1 ± 10 of 4 0.39None
Larval carcass3 ± 00 of 4 0.98None
S2 cells (growing)8 ± 11 of 4 2.28Up
Whole fly3 ± 00 of 4

Looking for CG13982-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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