FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13990-RA through 18771 annotations produced 1 hits

Mucin 26B (Muc26B):

Annotation Number : CG13990
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040950
Gbrowse : chr2L:6151970-6153701 (+) // 100.0 //
Probeset : 1632017_at
Accessions : protein= NP_652552;, nucleotide= NM_144295;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0040950.
BDGP gene expression has embryonic in situ data for CG13990: 12 pix of staining in 2 body parts.
VDRC has 3 RNAi stocks for FBgn0040950 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	7 ± 1	0 of 4	0.60	Down
Head	9 ± 0	1 of 4	0.70	None
Eye	4 ± 2	1 of 4	0.36	Down
Thoracicoabdominal ganglion	6 ± 1	0 of 4	0.50	Down
Salivary gland	18 ± 2	1 of 4	1.46	None
Crop	6 ± 3	0 of 4	0.50	None
Midgut	14 ± 2	0 of 4	1.10	None
Tubule	8 ± 0	0 of 4	0.70	Down
Hindgut	10 ± 1	0 of 4	0.80	None
Heart	7 ± 0	1 of 4	0.54	Down
Fat body	13 ± 5	2 of 4	1.01	None
Ovary	7 ± 0	0 of 4	0.50	Down
Testis	8 ± 1	1 of 4	0.60	Down
Male accessory glands	7 ± 3	0 of 4	0.60	None
Virgin spermatheca	10 ± 0	2 of 4	0.80	None
Mated spermatheca	8 ± 2	1 of 4	0.68	None
Adult carcass	19 ± 4	1 of 4	1.50	None
Larval CNS	5 ± 1	0 of 4	0.44	Down
Larval Salivary gland	11 ± 1	2 of 4	0.92	None
Larval midgut	4039 ± 141	4 of 4	311.96	Up
Larval tubule	6 ± 2	0 of 4	0.50	None
Larval hindgut	12 ± 1	3 of 4	0.93	None
Larval fat body	10 ± 2	1 of 4	0.80	None
Larval trachea	8 ± 1	1 of 4	0.64	Down
Larval carcass	18 ± 1	0 of 4	1.43	Up
S2 cells (growing)	11 ± 1	1 of 4	0.88	None
Whole fly	13 ± 1	1 of 4

Looking for CG13990-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720