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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13993-RA through 18771 annotations produced 1 hits



(CG13993):

Annotation Number : CG13993
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031776
Gbrowse : chr2L:6069102-6069840 (+) // 100.0 //
Probeset : 1640263_at
Accessions : protein= NP_608992;, nucleotide= NM_135148;
Pathway : 0016272 // prefoldin complex // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051082 // unfolded protein binding // inferred fro
FlyMine data for FBgn0031776.
BDGP gene expression has embryonic in situ data for CG13993: 11 pix of staining in 10 body parts.
BioGrid reports that CG13993 interacts with CG18764 CG3093 CG7185 CG8854 CG9522 CG6856 CG9597 .
VDRC has 2 RNAi stocks for FBgn0031776 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain228 ± 64 of 4 0.70Down
Head185 ± 64 of 4 0.60Down
Eye169 ± 64 of 4 0.53Down
Thoracicoabdominal ganglion223 ± 94 of 4 0.70Down
Salivary gland176 ± 64 of 4 0.55Down
Crop311 ± 124 of 4 1.00None
Midgut262 ± 44 of 4 0.80Down
Tubule73 ± 74 of 4 0.20Down
Hindgut193 ± 44 of 4 0.60Down
Heart197 ± 14 of 4 0.62Down
Fat body157 ± 154 of 4 0.49Down
Ovary561 ± 64 of 4 1.80Up
Testis348 ± 24 of 4 1.10None
Male accessory glands208 ± 124 of 4 0.70Down
Virgin spermatheca113 ± 74 of 4 0.35Down
Mated spermatheca131 ± 94 of 4 0.41Down
Adult carcass129 ± 74 of 4 0.40Down
Larval CNS607 ± 304 of 4 1.90Up
Larval Salivary gland637 ± 124 of 4 1.99Up
Larval midgut201 ± 174 of 4 0.63Down
Larval tubule234 ± 84 of 4 0.70Down
Larval hindgut318 ± 204 of 4 0.99None
Larval fat body176 ± 164 of 4 0.60Down
Larval trachea495 ± 724 of 4 1.55Up
Larval carcass447 ± 424 of 4 1.40None
S2 cells (growing)757 ± 74 of 4 2.37Up
Whole fly320 ± 114 of 4

Looking for CG13993-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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