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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13994-RA through 18771 annotations produced 1 hits



(CG13994):

Annotation Number : CG13994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031772
Gbrowse : chr2L:6063017-6063676 (+) // 100.0 //
Probeset : 1635621_at
Accessions : protein= NP_608988;, nucleotide= NM_135144;
FlyMine data for FBgn0031772.
VDRC has 4 RNAi stocks for FBgn0031772 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain123 ± 24 of 4 0.60Down
Head141 ± 24 of 4 0.70Down
Eye206 ± 114 of 4 1.08None
Thoracicoabdominal ganglion135 ± 24 of 4 0.70Down
Salivary gland285 ± 84 of 4 1.50Up
Crop281 ± 174 of 4 1.50Up
Midgut137 ± 24 of 4 0.70Down
Tubule242 ± 94 of 4 1.30Up
Hindgut236 ± 54 of 4 1.20Up
Heart132 ± 44 of 4 0.70Down
Fat body117 ± 84 of 4 0.62Down
Ovary283 ± 64 of 4 1.50Up
Testis713 ± 144 of 4 3.70Up
Male accessory glands129 ± 24 of 4 0.70Down
Virgin spermatheca167 ± 84 of 4 0.88None
Mated spermatheca178 ± 94 of 4 0.94None
Adult carcass107 ± 144 of 4 0.60Down
Larval CNS253 ± 84 of 4 1.33Up
Larval Salivary gland183 ± 204 of 4 0.96None
Larval midgut106 ± 34 of 4 0.56Down
Larval tubule393 ± 94 of 4 2.10Up
Larval hindgut311 ± 74 of 4 1.63Up
Larval fat body257 ± 314 of 4 1.30None
Larval trachea192 ± 154 of 4 1.01None
Larval carcass127 ± 44 of 4 0.67Down
S2 cells (growing)195 ± 24 of 4 1.03None
Whole fly190 ± 64 of 4

Looking for CG13994-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime