FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13995-RA through 18771 annotations produced 1 hits

chr2L:6054306-6060169 (+) // 100.0 // ():

Annotation Number : CG13995
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1632424_at
Accessions : protein= , nucleotide= NP_608986;
Pathway : 0007186 // G-protein coupled receptor protein signaling pathway // inferred from electronic annotation /// 0007186 // G-
Interpro : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	504 ± 6	4 of 4	32.70	Up
Head	105 ± 4	4 of 4	6.80	Up
Eye	31 ± 1	4 of 4	2.03	Up
Thoracicoabdominal ganglion	462 ± 12	4 of 4	30.00	Up
Salivary gland	10 ± 2	0 of 4	0.68	None
Crop	6 ± 1	0 of 4	0.40	Down
Midgut	2 ± 1	0 of 4	0.20	Down
Tubule	3 ± 0	0 of 4	0.20	Down
Hindgut	2 ± 1	0 of 4	0.20	Down
Heart	1 ± 1	0 of 4	0.11	Down
Fat body	3 ± 2	0 of 4	0.23	Down
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	2 ± 1	0 of 4	0.20	Down
Male accessory glands	4 ± 1	0 of 4	0.30	Down
Virgin spermatheca	4 ± 0	0 of 4	0.32	Down
Mated spermatheca	4 ± 0	0 of 4	0.28	Down
Adult carcass	7 ± 2	0 of 4	0.50	None
Larval CNS	273 ± 23	4 of 4	17.71	Up
Larval Salivary gland	8 ± 1	0 of 4	0.57	None
Larval midgut	2 ± 1	0 of 4	0.16	Down
Larval tubule	2 ± 1	0 of 4	0.20	Down
Larval hindgut	4 ± 1	0 of 4	0.28	Down
Larval fat body	7 ± 1	0 of 4	0.50	Down
Larval trachea	4 ± 2	1 of 4	0.29	Down
Larval carcass	12 ± 1	3 of 4	0.84	None
S2 cells (growing)	2 ± 0	0 of 4	0.14	Down
Whole fly	15 ± 2	3 of 4

Looking for CG13995-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720