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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13996-RA through 18771 annotations produced 1 hits



(CG13996):

Annotation Number : CG13996
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031763
Gbrowse : chr2L:6020849-6021672 (+) // 100.0 //
Probeset : 1627815_at
Accessions : protein= NP_608980;, nucleotide= NM_135136;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031763.
BioGrid reports that CG13996 interacts with CG1799 CG6904 CG1422 CG17370 CG2189 CG3052 CG31605 CG31705 CG3510 CG4193 CG4843 CG5009 CG5108 CG6022 CG6593 CG7434 CG7889 CG9414 CG9638 CG33555 .
TRiP has 1 RNAi stocks for FBgn0031763 available for purchase.
VDRC has 2 RNAi stocks for FBgn0031763 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 9.70Up
Head1 00 of 4 2.30None
Eye1 00 of 4 1.78None
Thoracicoabdominal ganglion3 10 of 4 5.10None
Salivary gland6 40 of 411.43None
Crop0 00 of 4 1.10None
Midgut5 10 of 4 8.70None
Tubule2 00 of 4 5.10Up
Hindgut0 00 of 4 1.40None
Heart1 00 of 4 2.48None
Fat body1 00 of 4 1.70None
Ovary1 10 of 4 2.90None
Testis1 00 of 4 2.30None
Male accessory glands1 00 of 4 1.90None
Virgin spermatheca2 00 of 4 4.35None
Mated spermatheca1 00 of 4 2.61Up
Adult carcass1 00 of 4 2.70None
Larval CNS0 00 of 4 1.65None
Larval Salivary gland4 10 of 4 7.00None
Larval midgut1 00 of 4 3.00None
Larval tubule1 00 of 4 2.10None
Larval hindgut0 00 of 4 1.13None
Larval fat body2 10 of 4 4.10None
Larval trachea1 00 of 4 1.83None
Larval carcass0 00 of 4 1.43None
S2 cells (growing)0 00 of 4 1.70None
Whole fly0 00 of 4

Looking for CG13996-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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