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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13998-RA through 18771 annotations produced 1 hits


Annotation Number : CG13998
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040949
Gbrowse : chr2L:5956511-5956805 (-) // 100.0 //
Probeset : 1640990_at
Accessions : protein= NP_652551;, nucleotide= NM_144294;
FlyMine data for FBgn0040949.
TRiP has 1 RNAi stocks for FBgn0040949 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040949 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.20Down
Head6 11 of 4 0.30Down
Eye3 11 of 4 0.17Down
Thoracicoabdominal ganglion7 00 of 4 0.40None
Salivary gland11 21 of 4 0.56None
Crop5 10 of 4 0.20Down
Midgut11 13 of 4 0.60None
Tubule7 00 of 4 0.40Down
Hindgut5 10 of 4 0.20Down
Heart0 00 of 4 0.03Down
Fat body5 30 of 4 0.30Down
Ovary20 34 of 4 1.10None
Testis5 10 of 4 0.30Down
Male accessory glands14 50 of 4 0.70None
Virgin spermatheca5 20 of 4 0.28Down
Mated spermatheca6 01 of 4 0.33Down
Adult carcass11 41 of 4 0.60None
Larval CNS3 20 of 4 0.17Down
Larval Salivary gland4 10 of 4 0.22Down
Larval midgut4 10 of 4 0.21Down
Larval tubule6 12 of 4 0.30Down
Larval hindgut6 10 of 4 0.30Down
Larval fat body8 10 of 4 0.40None
Larval trachea3 10 of 4 0.16Down
Larval carcass8 10 of 4 0.40None
S2 cells (growing)7 10 of 4 0.39None
Whole fly19 44 of 4

Looking for CG13998-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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