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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14000-RA through 18771 annotations produced 1 hits


(CG14000):

Annotation Number : CG14000
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031749
Gbrowse : chr2L:5908905-5910289 (-) // 100.0 //
Probeset : 1637580_at
Accessions : protein= NP_608969;, nucleotide= NM_135125;
FlyMine data for FBgn0031749.
BDGP gene expression has embryonic in situ data for CG14000: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0031749 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland4 ± 30 of 4 0.23Down
Crop1 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.05Down
Fat body0 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis250 ± 184 of 413.00Up
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.12Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut0 ± 00 of 4 0.02Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.02Down
Larval fat body21 ± 111 of 4 1.10None
Larval trachea1 ± 00 of 4 0.09Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.08Down
Whole fly19 ± 24 of 4

Looking for CG14000-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime