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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14001-RA through 18771 annotations produced 1 hits



beached (bchs):

Annotation Number : CG14001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043362
Gbrowse : chr2L:5907179-5921242 (+) // 100.0 //
Probeset : 1632057_at
Accessions : protein= NP_608968;, nucleotide= NM_135124;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0030424 // axon // non-traceable author statement /// 0031594 //
Interpro : 0005488 // binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic an
FlyMine data for FBgn0043362.
Homophila reports that CG14001 is a close match (1e-114) to human gene CHS1;LYST (NP_000072), a gene associated with Chediak-Higashi syndrome, 214500 (3).
TRiP has 1 RNAi stocks for FBgn0043362 available for purchase.
VDRC has 2 RNAi stocks for FBgn0043362 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain134 34 of 4 4.60Up
Head60 64 of 4 2.10Up
Eye133 124 of 4 4.57Up
Thoracicoabdominal ganglion82 54 of 4 2.80Up
Salivary gland69 134 of 4 2.37None
Crop39 24 of 4 1.40Up
Midgut35 34 of 4 1.20None
Tubule150 314 of 4 5.20Up
Hindgut42 14 of 4 1.40Up
Heart32 34 of 4 1.12None
Fat body23 14 of 4 0.81None
Ovary27 14 of 4 0.90None
Testis38 24 of 4 1.30Up
Male accessory glands48 44 of 4 1.70Up
Virgin spermatheca39 44 of 4 1.37None
Mated spermatheca42 24 of 4 1.46Up
Adult carcass43 34 of 4 1.50Up
Larval CNS65 74 of 4 2.25Up
Larval Salivary gland30 14 of 4 1.05None
Larval midgut46 64 of 4 1.60None
Larval tubule63 34 of 4 2.20Up
Larval hindgut47 14 of 4 1.62Up
Larval fat body82 64 of 4 2.80Up
Larval trachea38 64 of 4 1.31None
Larval carcass69 184 of 4 2.38None
S2 cells (growing)99 14 of 4 3.40Up
Whole fly29 24 of 4

Looking for CG14001-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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