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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14010-RA through 18771 annotations produced 1 hits



(CG14010):

Annotation Number : CG14010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031725
Gbrowse : chr2L:5602829-5613023 (-) // 100.0 //
Probeset : 1625782_at
Accessions : protein= NP_608946;, nucleotide= NM_135102;
FlyMine data for FBgn0031725.
Homophila reports that CG14010 is a close match (3e-11) to human gene HSPG2;PLC;SJS;SJA;SJS1 (NP_005520), a gene associated with Dyssegmental dysplasia, Silverman-Handmaker type, 224410 (3);Schwartz-Jampel syndrome, type 1, 255800 (3).
TRiP has 1 RNAi stocks for FBgn0031725 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain48 ± 14 of 415.40Up
Head9 ± 10 of 4 2.90Up
Eye2 ± 00 of 4 0.74None
Thoracicoabdominal ganglion24 ± 43 of 4 7.80Up
Salivary gland6 ± 30 of 4 2.06None
Crop1 ± 00 of 4 0.40None
Midgut5 ± 10 of 4 1.70None
Tubule2 ± 00 of 4 0.90None
Hindgut2 ± 00 of 4 0.60None
Heart0 ± 00 of 4 0.26None
Fat body1 ± 00 of 4 0.46None
Ovary2 ± 00 of 4 0.70None
Testis3 ± 10 of 4 1.10None
Male accessory glands2 ± 00 of 4 0.60None
Virgin spermatheca1 ± 00 of 4 0.34None
Mated spermatheca1 ± 00 of 4 0.30None
Adult carcass1 ± 00 of 4 0.30None
Larval CNS11 ± 33 of 4 3.83Up
Larval Salivary gland3 ± 11 of 4 1.12None
Larval midgut4 ± 10 of 4 1.38None
Larval tubule3 ± 10 of 4 1.10None
Larval hindgut1 ± 00 of 4 0.43None
Larval fat body2 ± 00 of 4 0.80None
Larval trachea0 ± 00 of 4 0.26None
Larval carcass1 ± 00 of 4 0.61None
S2 cells (growing)3 ± 10 of 4 1.01None
Whole fly3 ± 10 of 4

Looking for CG14010-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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