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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1402-RA through 18771 annotations produced 1 hits



(CG1402):

Annotation Number : CG1402
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029962
Gbrowse : chrX:7730862-7731549 (+) // 100.0 //
Probeset : 1641185_at
Accessions : protein= NP_572407;, nucleotide= NM_132179;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0004089 // carbonate dehydratase activity // inferred from sequence or structural similarity /// 0004089 // carbonate de
FlyMine data for FBgn0029962.
Homophila reports that CG1402 is a close match (4e-21) to human gene CA4;RP17 (NP_000708), a gene associated with Retinitis pigmentosa-17, 600852 (3).
VDRC has 2 RNAi stocks for FBgn0029962 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain114 ± 44 of 423.60Up
Head20 ± 34 of 4 4.30Up
Eye2 ± 10 of 4 0.50None
Thoracicoabdominal ganglion200 ± 104 of 441.50Up
Salivary gland14 ± 21 of 4 2.98Up
Crop3 ± 10 of 4 0.70None
Midgut3 ± 10 of 4 0.60None
Tubule5 ± 10 of 4 1.00None
Hindgut2 ± 10 of 4 0.50None
Heart3 ± 10 of 4 0.78None
Fat body4 ± 40 of 4 0.99None
Ovary1 ± 00 of 4 0.20Down
Testis2 ± 00 of 4 0.50Down
Male accessory glands6 ± 20 of 4 1.40None
Virgin spermatheca4 ± 10 of 4 0.89None
Mated spermatheca6 ± 20 of 4 1.35None
Adult carcass8 ± 50 of 4 1.70None
Larval CNS81 ± 94 of 416.89Up
Larval Salivary gland3 ± 10 of 4 0.69None
Larval midgut7 ± 10 of 4 1.49None
Larval tubule3 ± 20 of 4 0.60None
Larval hindgut7 ± 30 of 4 1.45None
Larval fat body5 ± 00 of 4 1.20None
Larval trachea4 ± 10 of 4 0.99None
Larval carcass2 ± 00 of 4 0.45Down
S2 cells (growing)2 ± 00 of 4 0.44Down
Whole fly4 ± 00 of 4

Looking for CG1402-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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