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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14027-RA through 18771 annotations produced 1 hits



Turandot M (TotM):

Annotation Number : CG14027
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031701
Gbrowse : chr2L:5329856-5330466 (+) // 100.0 //
Probeset : 1623635_at
Accessions : protein= NP_523482;, nucleotide= NM_078758;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
FlyMine data for FBgn0031701.
VDRC has 4 RNAi stocks for FBgn0031701 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain28 ± 64 of 4 0.10None
Head1818 ± 2764 of 4 6.30Up
Eye1507 ± 4384 of 4 5.21None
Thoracicoabdominal ganglion21 ± 34 of 4 0.10None
Salivary gland9 ± 01 of 4 0.03None
Crop18 ± 14 of 4 0.10None
Midgut27 ± 34 of 4 0.10None
Tubule61 ± 173 of 4 0.20Down
Hindgut30 ± 94 of 4 0.10None
Heart1554 ± 4334 of 4 5.38None
Fat body2789 ± 4964 of 4 9.65Up
Ovary3 ± 00 of 4 0.00None
Testis6 ± 03 of 4 0.00None
Male accessory glands116 ± 74 of 4 0.40None
Virgin spermatheca4601 ± 10194 of 415.92Up
Mated spermatheca3767 ± 8784 of 413.03Up
Adult carcass1240 ± 2334 of 4 4.30Up
Larval CNS2 ± 10 of 4 0.01None
Larval Salivary gland4 ± 10 of 4 0.01None
Larval midgut11 ± 23 of 4 0.04None
Larval tubule7 ± 11 of 4 0.00None
Larval hindgut4 ± 01 of 4 0.02None
Larval fat body3 ± 10 of 4 0.00None
Larval trachea22 ± 401 of 4 0.08None
Larval carcass5 ± 10 of 4 0.02None
S2 cells (growing)220 ± 234 of 4 0.76None
Whole fly289 ± 954 of 4

Looking for CG14027-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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