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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14029-RC through 18771 annotations produced 1 hits



chr2L:5299646-5310997 (+) // 100.0 // (vrille):

Annotation Number : CG14029
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1639273_s_at
Accessions : protein= , nucleotide= NP_001137792; /// NP_477191; /// NP_723075;
Pathway : "0006351 // transcription
Interpro : DNA-dependent // non-traceable author statement /// 0006355 // regulation of transcription
FlyMine data for full length.
BioGrid reports that CG14029 interacts with CG9885 CG4920 CG17888 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain117 ± 184 of 4 0.70None
Head646 ± 334 of 4 3.90Up
Eye922 ± 2974 of 4 5.51None
Thoracicoabdominal ganglion104 ± 144 of 4 0.60None
Salivary gland255 ± 214 of 4 1.53None
Crop401 ± 554 of 4 2.40Up
Midgut315 ± 184 of 4 1.90Up
Tubule397 ± 844 of 4 2.40Up
Hindgut345 ± 444 of 4 2.10Up
Heart160 ± 144 of 4 0.96None
Fat body159 ± 374 of 4 0.96None
Ovary21 ± 14 of 4 0.10Down
Testis43 ± 44 of 4 0.30Down
Male accessory glands472 ± 284 of 4 2.80Up
Virgin spermatheca514 ± 734 of 4 3.08Up
Mated spermatheca510 ± 184 of 4 3.05Up
Adult carcass319 ± 214 of 4 1.90Up
Larval CNS176 ± 364 of 4 1.06None
Larval Salivary gland579 ± 234 of 4 3.47Up
Larval midgut378 ± 514 of 4 2.26Up
Larval tubule669 ± 64 of 4 4.00Up
Larval hindgut218 ± 354 of 4 1.31None
Larval fat body210 ± 124 of 4 1.30None
Larval trachea220 ± 264 of 4 1.32None
Larval carcass236 ± 344 of 4 1.41None
S2 cells (growing)64 ± 74 of 4 0.39Down
Whole fly167 ± 324 of 4

Looking for CG14029-RC. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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