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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1403-RA through 18771 annotations produced 2 hits



septin (Sep-01):

Annotation Number : CG1403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011710
Gbrowse : chrX:21229302-21232714 (+) // 100.0 //
Probeset : 1622999_at
Accessions : protein= NP_523430;, nucleotide= NM_078706;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0005940 // septin ring // inferred from sequ
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0011710.
BDGP gene expression has embryonic in situ data for Sep-01: 10 pix of staining in 6 body parts.
Homophila reports that CG1403 is a close match (2e-39) to human gene MSF;MSF1;NAPB;SEPT9 (NP_006631), a gene associated with Amyotrophy, hereditary neuralgic, 162100 (3);Leukemia, acute myeloid, therapy-related (1);Ovarian carcinoma (1).
BioGrid reports that CG1403 interacts with CG32654 CG4173 CG5792 CG8280 .
TRiP has 1 RNAi stocks for FBgn0011710 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 34 of 4 0.70Down
Head113 34 of 4 0.40Down
Eye139 74 of 4 0.50Down
Thoracicoabdominal ganglion246 104 of 4 0.90None
Salivary gland307 224 of 4 1.10None
Crop146 34 of 4 0.50Down
Midgut83 44 of 4 0.30Down
Tubule306 54 of 4 1.10Up
Hindgut108 24 of 4 0.40Down
Heart238 54 of 4 0.85Down
Fat body98 94 of 4 0.35Down
Ovary718 64 of 4 2.60Up
Testis138 54 of 4 0.50Down
Male accessory glands219 124 of 4 0.80Down
Virgin spermatheca186 114 of 4 0.67Down
Mated spermatheca183 94 of 4 0.66Down
Adult carcass96 64 of 4 0.30Down
Larval CNS735 334 of 4 2.63Up
Larval Salivary gland351 204 of 4 1.25Up
Larval midgut271 214 of 4 0.97None
Larval tubule1037 374 of 4 3.70Up
Larval hindgut550 344 of 4 1.97Up
Larval fat body336 104 of 4 1.20Up
Larval trachea538 404 of 4 1.92Up
Larval carcass354 294 of 4 1.26None
S2 cells (growing)890 144 of 4 3.18Up
Whole fly280 94 of 4



septin (Sep-01):

Annotation Number : CG1403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011710
Gbrowse : chrX:21229302-21231129 (+) // 100.0 //
Probeset : 1624328_a_at
Accessions : protein= NP_523430;, nucleotide= NM_078706;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay /// 0005940 // septin ring // inferred from sequ
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // non-traceable aut
FlyMine data for FBgn0011710.
BDGP gene expression has embryonic in situ data for Sep-01: 10 pix of staining in 6 body parts.
Homophila reports that CG1403 is a close match (2e-39) to human gene MSF;MSF1;NAPB;SEPT9 (NP_006631), a gene associated with Amyotrophy, hereditary neuralgic, 162100 (3);Leukemia, acute myeloid, therapy-related (1);Ovarian carcinoma (1).
BioGrid reports that CG1403 interacts with CG32654 CG4173 CG5792 CG8280 .
TRiP has 1 RNAi stocks for FBgn0011710 available for purchase.
VDRC has 2 RNAi stocks for FBgn0011710 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 04 of 4 0.60Down
Head21 34 of 4 0.30Down
Eye18 24 of 4 0.23Down
Thoracicoabdominal ganglion36 54 of 4 0.50Down
Salivary gland49 24 of 4 0.63None
Crop46 54 of 4 0.60None
Midgut39 34 of 4 0.50Down
Tubule14 12 of 4 0.20Down
Hindgut33 54 of 4 0.40Down
Heart31 34 of 4 0.40Down
Fat body17 61 of 4 0.22Down
Ovary151 44 of 4 1.90Up
Testis34 14 of 4 0.40Down
Male accessory glands62 64 of 4 0.80None
Virgin spermatheca2 10 of 4 0.04Down
Mated spermatheca4 10 of 4 0.05Down
Adult carcass27 03 of 4 0.30Down
Larval CNS111 174 of 4 1.42None
Larval Salivary gland71 104 of 4 0.90None
Larval midgut42 34 of 4 0.54None
Larval tubule293 84 of 4 3.70Up
Larval hindgut73 14 of 4 0.94None
Larval fat body131 84 of 4 1.70Up
Larval trachea54 134 of 4 0.70None
Larval carcass56 144 of 4 0.72None
S2 cells (growing)487 94 of 4 6.20Up
Whole fly78 114 of 4

Looking for CG1403-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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