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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14036-RA through 18771 annotations produced 1 hits



(CG14036):

Annotation Number : CG14036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031677
Gbrowse : chr2L:5054670-5054952 (-) // 100.0 //
Probeset : 1635831_at
Accessions : protein= NP_608903;, nucleotide= NM_135059;
FlyMine data for FBgn0031677.
BDGP gene expression has embryonic in situ data for CG14036: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031677 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.00Down
Head4 10 of 4 0.00Down
Eye6 01 of 4 0.02Down
Thoracicoabdominal ganglion5 21 of 4 0.00Down
Salivary gland12 10 of 4 0.03Down
Crop5 20 of 4 0.00Down
Midgut3 10 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut3 00 of 4 0.00Down
Heart7 01 of 4 0.02Down
Fat body16 54 of 4 0.04Down
Ovary567 114 of 4 1.50None
Testis252 124 of 4 0.70None
Male accessory glands9 20 of 4 0.00Down
Virgin spermatheca5 10 of 4 0.02Down
Mated spermatheca7 00 of 4 0.02Down
Adult carcass16 62 of 4 0.00Down
Larval CNS45 74 of 4 0.12Down
Larval Salivary gland6 21 of 4 0.02Down
Larval midgut9 30 of 4 0.03Down
Larval tubule10 20 of 4 0.00Down
Larval hindgut9 00 of 4 0.02Down
Larval fat body46 134 of 4 0.10Down
Larval trachea9 31 of 4 0.02Down
Larval carcass7 10 of 4 0.02Down
S2 cells (growing)37 14 of 4 0.10Down
Whole fly386 764 of 4

Looking for CG14036-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime