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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14059-RA through 18771 annotations produced 1 hits



(CG14059):

Annotation Number : CG14059
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036690
Gbrowse : chr3L:17023142-17024303 (-) // 100.0 //
Probeset : 1625664_at
Accessions : protein= NP_648949;, nucleotide= NM_140692;
FlyMine data for FBgn0036690.
VDRC has 2 RNAi stocks for FBgn0036690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 30 of 4 0.03Down
Crop19 ± 20 of 4 0.10Down
Midgut5 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut11 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.01Down
Fat body2 ± 10 of 4 0.02Down
Ovary180 ± 144 of 4 1.30None
Testis16 ± 00 of 4 0.10Down
Male accessory glands27 ± 50 of 4 0.20Down
Virgin spermatheca1 ± 00 of 4 0.01Down
Mated spermatheca2 ± 10 of 4 0.02Down
Adult carcass8 ± 50 of 4 0.10Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.02Down
Larval midgut8 ± 10 of 4 0.06Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.02Down
Larval fat body5 ± 30 of 4 0.00Down
Larval trachea1 ± 00 of 4 0.01Down
Larval carcass11 ± 40 of 4 0.08Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly142 ± 184 of 4

Looking for CG14059-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime