FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG1407-RA through 18771 annotations produced 2 hits

(CG1407):

Annotation Number : CG1407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033474
Gbrowse : chr2R:5918989-5920393 (-) // 100.0 //
Probeset : 1633735_a_at
Accessions : protein= NP_610544; /// NP_724868; /// NP_724869;, nucleotide= NM_136700; /// NM_165728; /// NM_165729;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0033474.
BDGP gene expression has embryonic in situ data for CG1407: 4 pix of staining in 1 body parts.
Homophila reports that CG1407 is a close match (1e-16) to human gene (NP_057116), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0033474 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	60 ± 2	4 of 4	1.00	None
Head	36 ± 3	4 of 4	0.60	Down
Eye	39 ± 4	4 of 4	0.64	Down
Thoracicoabdominal ganglion	48 ± 7	4 of 4	0.80	None
Salivary gland	14 ± 3	3 of 4	0.24	Down
Crop	40 ± 0	4 of 4	0.70	Down
Midgut	60 ± 3	4 of 4	1.00	None
Tubule	13 ± 0	3 of 4	0.20	Down
Hindgut	31 ± 2	4 of 4	0.50	Down
Heart	22 ± 1	4 of 4	0.37	Down
Fat body	30 ± 7	4 of 4	0.49	Down
Ovary	88 ± 7	4 of 4	1.40	Up
Testis	109 ± 10	4 of 4	1.80	Up
Male accessory glands	27 ± 2	4 of 4	0.40	Down
Virgin spermatheca	6 ± 0	1 of 4	0.10	Down
Mated spermatheca	8 ± 0	3 of 4	0.13	Down
Adult carcass	37 ± 4	4 of 4	0.60	Down
Larval CNS	38 ± 3	4 of 4	0.62	Down
Larval Salivary gland	22 ± 3	4 of 4	0.36	Down
Larval midgut	33 ± 2	4 of 4	0.55	Down
Larval tubule	86 ± 5	4 of 4	1.40	Up
Larval hindgut	30 ± 1	4 of 4	0.49	Down
Larval fat body	95 ± 4	4 of 4	1.60	Up
Larval trachea	24 ± 1	4 of 4	0.40	Down
Larval carcass	24 ± 4	4 of 4	0.40	Down
S2 cells (growing)	289 ± 6	4 of 4	4.72	Up
Whole fly	61 ± 3	4 of 4

(CG1407):

Annotation Number : CG1407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033474
Gbrowse : chr2R:5916765-5919630 (-) // 100.0 //
Probeset : 1626621_at
Accessions : protein= NP_610544; /// NP_724868; /// NP_724869;, nucleotide= NM_136700; /// NM_165728; /// NM_165729;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0033474.
BDGP gene expression has embryonic in situ data for CG1407: 4 pix of staining in 1 body parts.
Homophila reports that CG1407 is a close match (1e-16) to human gene (NP_057116), a gene associated with .
VDRC has 3 RNAi stocks for FBgn0033474 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	41 ± 1	4 of 4	0.10	Down
Head	82 ± 3	4 of 4	0.30	Down
Eye	83 ± 4	4 of 4	0.26	Down
Thoracicoabdominal ganglion	42 ± 2	4 of 4	0.10	Down
Salivary gland	122 ± 8	4 of 4	0.39	Down
Crop	232 ± 4	4 of 4	0.70	Down
Midgut	300 ± 14	4 of 4	1.00	None
Tubule	168 ± 8	4 of 4	0.50	Down
Hindgut	131 ± 3	4 of 4	0.40	Down
Heart	231 ± 13	4 of 4	0.74	Down
Fat body	248 ± 15	4 of 4	0.79	Down
Ovary	598 ± 9	4 of 4	1.90	Up
Testis	129 ± 3	4 of 4	0.40	Down
Male accessory glands	150 ± 8	4 of 4	0.50	Down
Virgin spermatheca	130 ± 7	4 of 4	0.41	Down
Mated spermatheca	154 ± 3	4 of 4	0.49	Down
Adult carcass	131 ± 9	4 of 4	0.40	Down
Larval CNS	217 ± 21	4 of 4	0.69	Down
Larval Salivary gland	349 ± 7	4 of 4	1.11	None
Larval midgut	466 ± 13	4 of 4	1.48	Up
Larval tubule	390 ± 13	4 of 4	1.20	Up
Larval hindgut	284 ± 9	4 of 4	0.90	None
Larval fat body	415 ± 16	4 of 4	1.30	Up
Larval trachea	289 ± 32	4 of 4	0.92	None
Larval carcass	309 ± 10	4 of 4	0.98	None
S2 cells (growing)	617 ± 12	4 of 4	1.96	Up
Whole fly	314 ± 15	4 of 4

Looking for CG1407-RA. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720