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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14071-RA through 18771 annotations produced 1 hits


Annotation Number : CG14071
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032312
Gbrowse : chr2L:10888367-10888778 (-) // 100.0 //
Probeset : 1623115_at
Accessions : protein= NP_609466;, nucleotide= NM_135622;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032312.
BioGrid reports that CG14071 interacts with CG17778 CG18332 CG4767 CG14145 CG17153 CG31224 CG3629 CG4079 CG5820 CG6856 CG7354 CG7886 .
VDRC has 3 RNAi stocks for FBgn0032312 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head2 10 of 4 0.10Down
Eye1 00 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland4 20 of 4 0.13Down
Crop1 00 of 4 0.00Down
Midgut4 20 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut1 00 of 4 0.00Down
Heart1 00 of 4 0.03Down
Fat body0 00 of 4 0.02Down
Ovary2 10 of 4 0.10Down
Testis519 154 of 414.20Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca0 00 of 4 0.01Down
Adult carcass1 00 of 4 0.00Down
Larval CNS2 10 of 4 0.07Down
Larval Salivary gland1 10 of 4 0.05Down
Larval midgut3 11 of 4 0.09Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut1 00 of 4 0.04Down
Larval fat body43 232 of 4 1.20None
Larval trachea5 41 of 4 0.15Down
Larval carcass2 10 of 4 0.07Down
S2 cells (growing)1 00 of 4 0.03Down
Whole fly36 14 of 4

Looking for CG14071-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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