Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14080-RA through 18771 annotations produced 2 hits



MKP-like (Mkp3):

Annotation Number : CG14080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036844
Gbrowse : chr3L:19061466-19079522 (-) // 100.0 //
Probeset : 1641361_a_at
Accessions : protein= NP_649087; /// NP_730385;, nucleotide= NM_140830; /// NM_168785;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007474 // imaginal disc-derived wing vein specification //
Interpro : open tracheal system // inferred from mutant phenotype /// 0043409 // negative regulation of MAPKKK cascade // inferred
FlyMine data for FBgn0036844.
BDGP gene expression has embryonic in situ data for Mkp3: 30 pix of staining in 24 body parts.
VDRC has 2 RNAi stocks for FBgn0036844 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain161 ± 44 of 4 1.10None
Head123 ± 154 of 4 0.80None
Eye141 ± 84 of 4 0.95None
Thoracicoabdominal ganglion134 ± 134 of 4 0.90None
Salivary gland71 ± 83 of 4 0.48Down
Crop160 ± 114 of 4 1.10None
Midgut101 ± 44 of 4 0.70Down
Tubule66 ± 34 of 4 0.40Down
Hindgut114 ± 54 of 4 0.80Down
Heart98 ± 44 of 4 0.66Down
Fat body75 ± 94 of 4 0.51Down
Ovary274 ± 154 of 4 1.80Up
Testis28 ± 14 of 4 0.20Down
Male accessory glands31 ± 11 of 4 0.20Down
Virgin spermatheca85 ± 54 of 4 0.57Down
Mated spermatheca88 ± 64 of 4 0.59Down
Adult carcass75 ± 64 of 4 0.50Down
Larval CNS92 ± 124 of 4 0.62Down
Larval Salivary gland7 ± 20 of 4 0.05Down
Larval midgut65 ± 44 of 4 0.44Down
Larval tubule50 ± 24 of 4 0.30Down
Larval hindgut68 ± 14 of 4 0.46Down
Larval fat body31 ± 33 of 4 0.20Down
Larval trachea182 ± 474 of 4 1.23None
Larval carcass41 ± 13 of 4 0.28Down
S2 cells (growing)325 ± 34 of 4 2.19Up
Whole fly148 ± 104 of 4



MKP-like (Mkp3):

Annotation Number : CG14080
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036844
Gbrowse : chr3L:19060831-19065496 (-) // 100.0 //
Probeset : 1637641_at
Accessions : protein= NP_649087; /// NP_730385;, nucleotide= NM_140830; /// NM_168785;
Pathway : open tracheal system // inferred from mutant phenotype /// 0007474 // imaginal disc-derived wing vein specification //
Interpro : open tracheal system // inferred from mutant phenotype /// 0043409 // negative regulation of MAPKKK cascade // inferred
FlyMine data for FBgn0036844.
BDGP gene expression has embryonic in situ data for Mkp3: 30 pix of staining in 24 body parts.
VDRC has 2 RNAi stocks for FBgn0036844 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain184 ± 124 of 414.00Up
Head39 ± 44 of 4 3.00Up
Eye33 ± 24 of 4 2.51Up
Thoracicoabdominal ganglion124 ± 114 of 4 9.40Up
Salivary gland23 ± 64 of 4 1.79None
Crop61 ± 34 of 4 4.70Up
Midgut15 ± 14 of 4 1.20None
Tubule24 ± 24 of 4 1.80Up
Hindgut29 ± 14 of 4 2.20Up
Heart21 ± 24 of 4 1.63Up
Fat body33 ± 14 of 4 2.55Up
Ovary13 ± 04 of 4 1.00None
Testis2 ± 01 of 4 0.20Down
Male accessory glands7 ± 10 of 4 0.50None
Virgin spermatheca29 ± 24 of 4 2.19Up
Mated spermatheca34 ± 54 of 4 2.63Up
Adult carcass18 ± 23 of 4 1.40None
Larval CNS96 ± 204 of 4 7.32Up
Larval Salivary gland5 ± 11 of 4 0.40Down
Larval midgut16 ± 24 of 4 1.23None
Larval tubule14 ± 24 of 4 1.10None
Larval hindgut28 ± 34 of 4 2.19Up
Larval fat body10 ± 11 of 4 0.80None
Larval trachea31 ± 34 of 4 2.40Up
Larval carcass11 ± 14 of 4 0.90None
S2 cells (growing)101 ± 124 of 4 7.71Up
Whole fly13 ± 24 of 4

Looking for CG14080-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime