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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14085-RA through 18771 annotations produced 1 hits


Annotation Number : CG14085
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036859
Gbrowse : chr3L:19262450-19267034 (+) // 100.0 //
Probeset : 1634752_a_at
Accessions : protein= NP_649101;, nucleotide= NM_140844;
FlyMine data for FBgn0036859.
VDRC has 2 RNAi stocks for FBgn0036859 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 10 of 4 0.70None
Head10 11 of 4 1.30None
Eye2 10 of 4 0.37Down
Thoracicoabdominal ganglion5 00 of 4 0.60None
Salivary gland17 32 of 4 2.31Up
Crop9 12 of 4 1.30None
Midgut10 11 of 4 1.40None
Tubule6 00 of 4 0.80Down
Hindgut6 21 of 4 0.90None
Heart3 10 of 4 0.41Down
Fat body7 20 of 4 0.93None
Ovary6 10 of 4 0.80None
Testis7 04 of 4 1.00None
Male accessory glands19 14 of 4 2.50Up
Virgin spermatheca7 11 of 4 0.95None
Mated spermatheca6 21 of 4 0.89None
Adult carcass15 33 of 4 2.00None
Larval CNS5 21 of 4 0.68None
Larval Salivary gland10 00 of 4 1.30None
Larval midgut5 20 of 4 0.75None
Larval tubule6 10 of 4 0.90None
Larval hindgut4 00 of 4 0.62None
Larval fat body9 01 of 4 1.20None
Larval trachea3 10 of 4 0.50Down
Larval carcass7 01 of 4 0.99None
S2 cells (growing)43 34 of 4 5.64Up
Whole fly7 11 of 4

Looking for CG14085-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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