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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14086-RA through 18771 annotations produced 1 hits



(CG14086):

Annotation Number : CG14086
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036860
Gbrowse : chr3L:19272158-19272924 (+) // 100.0 //
Probeset : 1630454_at
Accessions : protein= NP_001163466; /// NP_649102;, nucleotide= NM_001169995; /// NM_140845;
FlyMine data for FBgn0036860.
VDRC has 3 RNAi stocks for FBgn0036860 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 11 of 416.10Up
Head1 00 of 4 1.20None
Eye1 00 of 4 1.05None
Thoracicoabdominal ganglion52 24 of 454.90Up
Salivary gland2 00 of 4 2.50None
Crop0 00 of 4 0.50None
Midgut0 00 of 4 1.00None
Tubule1 00 of 4 1.50None
Hindgut0 00 of 4 0.80None
Heart0 00 of 4 0.68None
Fat body1 00 of 4 1.79Up
Ovary0 00 of 4 0.90None
Testis0 00 of 4 0.70None
Male accessory glands2 00 of 4 2.70None
Virgin spermatheca1 00 of 4 1.97None
Mated spermatheca1 00 of 4 1.24None
Adult carcass2 00 of 4 2.20None
Larval CNS23 31 of 424.42Up
Larval Salivary gland2 10 of 4 2.87None
Larval midgut1 00 of 4 1.71None
Larval tubule0 00 of 4 0.40None
Larval hindgut0 00 of 4 0.66None
Larval fat body2 10 of 4 2.50None
Larval trachea0 00 of 4 0.74None
Larval carcass0 00 of 4 0.87None
S2 cells (growing)0 00 of 4 1.00None
Whole fly1 00 of 4

Looking for CG14086-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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