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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14087-RA through 18771 annotations produced 1 hits



(CG14087):

Annotation Number : CG14087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036868
Gbrowse : chr3L:19380701-19383133 (+) // 100.0 //
Probeset : 1626722_at
Accessions : protein= NP_649109;, nucleotide= NM_140852;
FlyMine data for FBgn0036868.
VDRC has 1 RNAi stocks for FBgn0036868 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head3 10 of 4 0.40Down
Eye2 10 of 4 0.32Down
Thoracicoabdominal ganglion2 10 of 4 0.30Down
Salivary gland9 20 of 4 1.04None
Crop8 10 of 4 1.00None
Midgut3 10 of 4 0.40Down
Tubule5 00 of 4 0.60Down
Hindgut3 10 of 4 0.40Down
Heart2 10 of 4 0.30Down
Fat body3 20 of 4 0.40Down
Ovary3 00 of 4 0.40Down
Testis99 34 of 410.80Up
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca11 20 of 4 1.25None
Mated spermatheca6 10 of 4 0.72None
Adult carcass8 21 of 4 1.00None
Larval CNS5 00 of 4 0.61None
Larval Salivary gland1 00 of 4 0.14Down
Larval midgut3 10 of 4 0.38Down
Larval tubule5 10 of 4 0.50None
Larval hindgut6 10 of 4 0.70None
Larval fat body19 51 of 4 2.10None
Larval trachea3 20 of 4 0.33Down
Larval carcass4 10 of 4 0.44Down
S2 cells (growing)2 00 of 4 0.23Down
Whole fly9 12 of 4

Looking for CG14087-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime