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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14088-RA through 18771 annotations produced 1 hits



(CG14088):

Annotation Number : CG14088
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036858
Gbrowse : chr3L:19263142-19263742 (-) // 100.0 //
Probeset : 1623442_at
Accessions : protein= NP_649100;, nucleotide= NM_140843;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0036858.
VDRC has 2 RNAi stocks for FBgn0036858 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.80None
Head2 ± 00 of 4 1.60None
Eye0 ± 00 of 4 0.69None
Thoracicoabdominal ganglion3 ± 20 of 4 2.90None
Salivary gland6 ± 30 of 4 4.69None
Crop0 ± 00 of 4 0.60None
Midgut6 ± 10 of 4 5.10None
Tubule4 ± 00 of 4 3.40Up
Hindgut3 ± 10 of 4 2.60None
Heart1 ± 00 of 4 1.39None
Fat body2 ± 20 of 4 2.04None
Ovary1 ± 00 of 4 1.00None
Testis0 ± 00 of 4 0.50None
Male accessory glands9 ± 20 of 4 7.60None
Virgin spermatheca4 ± 10 of 4 3.51None
Mated spermatheca6 ± 00 of 4 4.92Up
Adult carcass4 ± 10 of 4 3.20None
Larval CNS2 ± 10 of 4 1.65None
Larval Salivary gland3 ± 10 of 4 2.49None
Larval midgut1 ± 10 of 4 1.37None
Larval tubule4 ± 20 of 4 3.70None
Larval hindgut3 ± 10 of 4 2.82None
Larval fat body1 ± 00 of 4 1.10None
Larval trachea1 ± 10 of 4 1.53None
Larval carcass2 ± 00 of 4 1.57None
S2 cells (growing)3 ± 00 of 4 2.67Up
Whole fly1 ± 00 of 4

Looking for CG14088-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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