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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14095-RA through 18771 annotations produced 1 hits



(CG14095):

Annotation Number : CG14095
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036870
Gbrowse : chr3L:19457231-19457790 (-) // 100.0 //
Probeset : 1623445_at
Accessions : protein= NP_649112;, nucleotide= NM_140855;
FlyMine data for FBgn0036870.
VDRC has 3 RNAi stocks for FBgn0036870 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 10 of 4 0.70None
Head20 ± 40 of 4 0.80None
Eye7 ± 00 of 4 0.30Down
Thoracicoabdominal ganglion24 ± 20 of 4 0.90None
Salivary gland34 ± 120 of 4 1.31None
Crop31 ± 20 of 4 1.20None
Midgut7 ± 10 of 4 0.30Down
Tubule10 ± 10 of 4 0.40Down
Hindgut27 ± 30 of 4 1.00None
Heart12 ± 20 of 4 0.49Down
Fat body51 ± 180 of 4 1.92None
Ovary27 ± 30 of 4 1.00None
Testis15 ± 30 of 4 0.60None
Male accessory glands32 ± 80 of 4 1.20None
Virgin spermatheca22 ± 60 of 4 0.85None
Mated spermatheca24 ± 70 of 4 0.91None
Adult carcass46 ± 20 of 4 1.80Up
Larval CNS21 ± 60 of 4 0.83None
Larval Salivary gland6 ± 00 of 4 0.25Down
Larval midgut12 ± 30 of 4 0.45Down
Larval tubule10 ± 20 of 4 0.40Down
Larval hindgut22 ± 10 of 4 0.84None
Larval fat body32 ± 63 of 4 1.20None
Larval trachea233 ± 274 of 4 8.80Up
Larval carcass50 ± 70 of 4 1.90Up
S2 cells (growing)38 ± 20 of 4 1.44None
Whole fly26 ± 40 of 4

Looking for CG14095-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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