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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14096-RA through 18771 annotations produced 1 hits



(CG14096):

Annotation Number : CG14096
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036871
Gbrowse : chr3L:19459705-19460129 (-) // 100.0 //
Probeset : 1639096_at
Accessions : protein= NP_649113;, nucleotide= NM_140856;
FlyMine data for FBgn0036871.
BioGrid reports that CG14096 interacts with CG14282 CG14224 CG4767 .
VDRC has 1 RNAi stocks for FBgn0036871 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 14 of 4 0.70None
Head14 04 of 4 0.80None
Eye5 20 of 4 0.27Down
Thoracicoabdominal ganglion19 24 of 4 1.00None
Salivary gland53 24 of 4 2.78Up
Crop14 24 of 4 0.70None
Midgut37 34 of 4 2.00Up
Tubule30 14 of 4 1.60Up
Hindgut15 14 of 4 0.80None
Heart7 02 of 4 0.40Down
Fat body28 113 of 4 1.46None
Ovary10 14 of 4 0.50Down
Testis7 02 of 4 0.40Down
Male accessory glands18 34 of 4 1.00None
Virgin spermatheca33 24 of 4 1.76Up
Mated spermatheca38 84 of 4 1.99None
Adult carcass22 24 of 4 1.20None
Larval CNS16 34 of 4 0.86None
Larval Salivary gland30 34 of 4 1.60None
Larval midgut39 22 of 4 2.05Up
Larval tubule26 14 of 4 1.40None
Larval hindgut12 14 of 4 0.66None
Larval fat body18 14 of 4 0.90None
Larval trachea41 74 of 4 2.15Up
Larval carcass15 24 of 4 0.83None
S2 cells (growing)12 14 of 4 0.64None
Whole fly19 24 of 4

Looking for CG14096-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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