FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG14100-RA through 18771 annotations produced 1 hits

(CG14100):

Annotation Number : CG14100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036889
Gbrowse : chr3L:19582162-19583615 (-) // 100.0 //
Probeset : 1633605_at
Accessions : protein= NP_649130;, nucleotide= NM_140873;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
Interpro : 0003723 // RNA binding // inferred from electronic annotation /// 0008168 // methyltransferase activity // inferred from
FlyMine data for FBgn0036889.
VDRC has 4 RNAi stocks for FBgn0036889 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	101 ± 1	4 of 4	1.10	None
Head	51 ± 0	4 of 4	0.50	Down
Eye	75 ± 3	4 of 4	0.81	Down
Thoracicoabdominal ganglion	137 ± 5	4 of 4	1.50	Up
Salivary gland	24 ± 6	2 of 4	0.27	Down
Crop	49 ± 3	4 of 4	0.50	Down
Midgut	39 ± 2	4 of 4	0.40	Down
Tubule	42 ± 2	4 of 4	0.50	Down
Hindgut	45 ± 1	4 of 4	0.50	Down
Heart	43 ± 2	4 of 4	0.47	Down
Fat body	39 ± 4	4 of 4	0.42	Down
Ovary	208 ± 8	4 of 4	2.20	Up
Testis	12 ± 0	4 of 4	0.10	Down
Male accessory glands	27 ± 1	4 of 4	0.30	Down
Virgin spermatheca	47 ± 3	4 of 4	0.51	Down
Mated spermatheca	54 ± 1	4 of 4	0.58	Down
Adult carcass	34 ± 2	3 of 4	0.40	Down
Larval CNS	98 ± 13	4 of 4	1.05	None
Larval Salivary gland	49 ± 3	4 of 4	0.52	Down
Larval midgut	39 ± 2	4 of 4	0.42	Down
Larval tubule	26 ± 1	4 of 4	0.30	Down
Larval hindgut	79 ± 7	4 of 4	0.85	None
Larval fat body	21 ± 2	4 of 4	0.20	Down
Larval trachea	57 ± 4	4 of 4	0.62	Down
Larval carcass	46 ± 7	4 of 4	0.49	Down
S2 cells (growing)	45 ± 1	4 of 4	0.49	Down
Whole fly	93 ± 5	4 of 4

Looking for CG14100-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720