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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14101-RA through 18771 annotations produced 1 hits



/// (CG14101 /// CG42529):

Annotation Number : CG14101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036905 /// FBgn0260434
Gbrowse : chr3L:19753438-19754737 (+) // 100.0 // /// chr3L:19722023-19723322 (+) // 100.0 //
Probeset : 1627687_at
Accessions : protein= NP_001163471; /// NP_649146;, nucleotide= NM_001170000; /// NM_140889;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036905 /// FBgn0260434.
BioGrid reports that CG14101 interacts with CG3124 CG4983 CG8854 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye5 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 11 of 4 0.00Down
Salivary gland2 ± 10 of 4 0.02Down
Crop4 ± 20 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.02Down
Fat body3 ± 30 of 4 0.03Down
Ovary2 ± 10 of 4 0.00Down
Testis1586 ± 374 of 411.20Up
Male accessory glands7 ± 20 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.02Down
Mated spermatheca5 ± 11 of 4 0.03Down
Adult carcass8 ± 30 of 4 0.10Down
Larval CNS0 ± 10 of 4 0.01Down
Larval Salivary gland5 ± 21 of 4 0.04Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule3 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.00Down
Larval fat body105 ± 514 of 4 0.70None
Larval trachea6 ± 51 of 4 0.04Down
Larval carcass2 ± 10 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly141 ± 84 of 4

Looking for CG14101-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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