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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1411-RD through 18771 annotations produced 2 hits



dihydropyrimidine amidohydrolase (CRMP):

Annotation Number : CG1411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023023
Gbrowse : chr3R:1396829-1401063 (+) // 100.0 //
Probeset : 1624674_at
Accessions : protein= NP_477307; /// NP_730952; /// NP_730953; /// NP_730954;, nucleotide= NM_057959; /// NM_169070; /// NM_169071; /// NM_169072;
Interpro : "0004157 // dihydropyrimidinase activity // inferred from sequence or structural similarity /// 0004157 // dihydropyrimi
FlyMine data for FBgn0023023.
BDGP gene expression has embryonic in situ data for CRMP: 21 pix of staining in 7 body parts.
Homophila reports that CG1411 is a close match (3e-34) to human gene DHP;DPYS (NP_001376), a gene associated with Dihydropyrimidinuria (3).
TRiP has 1 RNAi stocks for FBgn0023023 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 5.60None
Head2 10 of 4 3.00None
Eye3 10 of 4 5.46None
Thoracicoabdominal ganglion1 00 of 4 2.50None
Salivary gland3 10 of 4 4.54None
Crop1 00 of 4 1.50None
Midgut0 00 of 4 0.40None
Tubule1 00 of 4 2.00None
Hindgut0 00 of 4 0.90None
Heart1 00 of 4 1.96None
Fat body1 10 of 4 1.85None
Ovary0 00 of 4 0.40None
Testis1 00 of 4 2.90None
Male accessory glands2 10 of 4 3.90None
Virgin spermatheca1 00 of 4 2.04None
Mated spermatheca1 00 of 4 1.50None
Adult carcass4 10 of 4 6.90None
Larval CNS1 00 of 4 1.73None
Larval Salivary gland2 00 of 4 3.42None
Larval midgut0 00 of 4 0.69None
Larval tubule1 10 of 4 2.70None
Larval hindgut1 00 of 4 1.46None
Larval fat body1 00 of 4 2.90None
Larval trachea2 20 of 4 3.85None
Larval carcass0 00 of 4 1.19None
S2 cells (growing)1 00 of 4 2.85None
Whole fly0 00 of 4



dihydropyrimidine amidohydrolase (CRMP):

Annotation Number : CG1411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0023023
Gbrowse : chr3R:1396829-1401063 (+) // 100.0 //
Probeset : 1635381_a_at
Accessions : protein= NP_477307; /// NP_730952; /// NP_730953; /// NP_730954;, nucleotide= NM_057959; /// NM_169070; /// NM_169071; /// NM_169072;
Interpro : "0004157 // dihydropyrimidinase activity // inferred from sequence or structural similarity /// 0004157 // dihydropyrimi
FlyMine data for FBgn0023023.
BDGP gene expression has embryonic in situ data for CRMP: 21 pix of staining in 7 body parts.
Homophila reports that CG1411 is a close match (3e-34) to human gene DHP;DPYS (NP_001376), a gene associated with Dihydropyrimidinuria (3).
TRiP has 1 RNAi stocks for FBgn0023023 available for purchase.
VDRC has 2 RNAi stocks for FBgn0023023 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain94 54 of 4 9.00Up
Head39 84 of 4 3.80Up
Eye8 20 of 4 0.78None
Thoracicoabdominal ganglion37 74 of 4 3.60Up
Salivary gland23 73 of 4 2.24None
Crop40 74 of 4 3.90Up
Midgut2 10 of 4 0.20Down
Tubule1 00 of 4 0.10Down
Hindgut41 14 of 4 3.90Up
Heart5 10 of 4 0.48Down
Fat body22 131 of 4 2.18None
Ovary3 00 of 4 0.30Down
Testis2 00 of 4 0.20Down
Male accessory glands6 10 of 4 0.60None
Virgin spermatheca1 00 of 4 0.18Down
Mated spermatheca5 10 of 4 0.52Down
Adult carcass26 22 of 4 2.50Up
Larval CNS39 24 of 4 3.78Up
Larval Salivary gland3 10 of 4 0.32Down
Larval midgut1 00 of 4 0.10Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut4 11 of 4 0.46Down
Larval fat body34 64 of 4 3.30Up
Larval trachea0 00 of 4 0.07Down
Larval carcass17 43 of 4 1.65None
S2 cells (growing)20 14 of 4 1.99Up
Whole fly10 00 of 4

Looking for CG1411-RD. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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