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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14110-RA through 18771 annotations produced 1 hits


Annotation Number : CG14110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036352
Gbrowse : chr3L:13377890-13379030 (+) // 99.63 //
Probeset : 1635686_at
Accessions : protein= NP_648638;, nucleotide= NM_140381;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036352.
BDGP gene expression has embryonic in situ data for CG14110: 33 pix of staining in 8 body parts.
BioGrid reports that CG14110 interacts with CG4617 CG9948 CG9797 CG3485 .
VDRC has 2 RNAi stocks for FBgn0036352 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10None
Head2 10 of 4 0.10None
Eye2 10 of 4 0.11None
Thoracicoabdominal ganglion2 10 of 4 0.10None
Salivary gland10 20 of 4 0.36None
Crop7 10 of 4 0.30None
Midgut6 20 of 4 0.20None
Tubule2 00 of 4 0.10Down
Hindgut3 10 of 4 0.10None
Heart2 11 of 4 0.09None
Fat body3 10 of 4 0.13None
Ovary2 10 of 4 0.10None
Testis2 00 of 4 0.10None
Male accessory glands1 00 of 4 0.10None
Virgin spermatheca5 00 of 4 0.19None
Mated spermatheca4 00 of 4 0.15None
Adult carcass7 10 of 4 0.30None
Larval CNS2 20 of 4 0.09None
Larval Salivary gland7 00 of 4 0.25None
Larval midgut5 10 of 4 0.20None
Larval tubule2 10 of 4 0.10None
Larval hindgut2 10 of 4 0.10None
Larval fat body5 20 of 4 0.20None
Larval trachea2 10 of 4 0.10None
Larval carcass1 00 of 4 0.06None
S2 cells (growing)0 00 of 4 0.03None
Whole fly27 103 of 4

Looking for CG14110-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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