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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG14111-RA through 18771 annotations produced 1 hits



(CG14111):

Annotation Number : CG14111
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036350
Gbrowse : chr3L:13372391-13373480 (+) // 100.0 //
Probeset : 1631440_at
Accessions : protein= NP_648636;, nucleotide= NM_140379;
FlyMine data for FBgn0036350.
BioGrid reports that CG14111 interacts with CG7347 .
VDRC has 2 RNAi stocks for FBgn0036350 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head5 ± 10 of 4 0.30Down
Eye4 ± 10 of 4 0.23Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.40Down
Salivary gland12 ± 30 of 4 0.73None
Crop9 ± 20 of 4 0.50Down
Midgut4 ± 10 of 4 0.20Down
Tubule4 ± 10 of 4 0.30Down
Hindgut5 ± 10 of 4 0.30Down
Heart2 ± 00 of 4 0.14Down
Fat body6 ± 20 of 4 0.40Down
Ovary5 ± 10 of 4 0.30Down
Testis48 ± 34 of 4 2.80Up
Male accessory glands10 ± 20 of 4 0.60None
Virgin spermatheca3 ± 10 of 4 0.21Down
Mated spermatheca3 ± 00 of 4 0.20Down
Adult carcass8 ± 30 of 4 0.50None
Larval CNS5 ± 41 of 4 0.32Down
Larval Salivary gland7 ± 20 of 4 0.40Down
Larval midgut13 ± 51 of 4 0.76None
Larval tubule6 ± 20 of 4 0.30Down
Larval hindgut6 ± 10 of 4 0.38Down
Larval fat body15 ± 51 of 4 0.90None
Larval trachea2 ± 20 of 4 0.15Down
Larval carcass5 ± 10 of 4 0.33Down
S2 cells (growing)6 ± 10 of 4 0.39Down
Whole fly17 ± 12 of 4

Looking for CG14111-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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