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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1412-RA through 18771 annotations produced 1 hits



RhoGAP19D (RhoGAP19D):

Annotation Number : CG1412
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031118
Gbrowse : chrX:20340843-20362133 (-) // 100.0 //
Probeset : 1624541_at
Accessions : protein= NP_001162809; /// NP_608396;, nucleotide= NM_001169338; /// NM_134552;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0031118.
BDGP gene expression has embryonic in situ data for RhoGAP19D: 15 pix of staining in 9 body parts.
Homophila reports that CG1412 is a close match (1e-13) to human gene CELIAC4;MYO9B;MYR5 (NP_004136), a gene associated with {Celiac disease, susceptibility to, 4}, 609753 (3).
TRiP has 1 RNAi stocks for FBgn0031118 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031118 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain407 ± 104 of 4 5.10Up
Head131 ± 64 of 4 1.60Up
Eye73 ± 54 of 4 0.92None
Thoracicoabdominal ganglion260 ± 104 of 4 3.20Up
Salivary gland214 ± 44 of 4 2.67Up
Crop82 ± 24 of 4 1.00None
Midgut168 ± 54 of 4 2.10Up
Tubule144 ± 104 of 4 1.80Up
Hindgut147 ± 64 of 4 1.80Up
Heart59 ± 14 of 4 0.74Down
Fat body53 ± 64 of 4 0.67Down
Ovary257 ± 14 of 4 3.20Up
Testis25 ± 24 of 4 0.30Down
Male accessory glands103 ± 54 of 4 1.30Up
Virgin spermatheca76 ± 94 of 4 0.96None
Mated spermatheca100 ± 174 of 4 1.25None
Adult carcass53 ± 34 of 4 0.70Down
Larval CNS393 ± 774 of 4 4.91Up
Larval Salivary gland68 ± 44 of 4 0.85None
Larval midgut161 ± 74 of 4 2.01Up
Larval tubule82 ± 34 of 4 1.00None
Larval hindgut131 ± 34 of 4 1.64Up
Larval fat body29 ± 34 of 4 0.40Down
Larval trachea105 ± 264 of 4 1.32None
Larval carcass105 ± 44 of 4 1.32Up
S2 cells (growing)182 ± 94 of 4 2.27Up
Whole fly80 ± 24 of 4

Looking for CG1412-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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