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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG14120-RA through 18771 annotations produced 1 hits


(CG14120):

Annotation Number : CG14120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036321
Gbrowse : chr3L:12878151-12882267 (+) // 100.0 //
Probeset : 1628823_at
Accessions : protein= NP_648610;, nucleotide= NM_140353;
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0036321.
BioGrid reports that CG14120 interacts with CG5825 .
VDRC has 3 RNAi stocks for FBgn0036321 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.00Down
Head4 ± 00 of 4 0.00Down
Eye4 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion9 ± 13 of 4 0.00Down
Salivary gland26 ± 41 of 4 0.08Down
Crop9 ± 02 of 4 0.00Down
Midgut2149 ± 1194 of 4 6.70Up
Tubule298 ± 414 of 4 0.90None
Hindgut1038 ± 584 of 4 3.20Up
Heart4 ± 00 of 4 0.01Down
Fat body10 ± 34 of 4 0.03Down
Ovary4 ± 12 of 4 0.00Down
Testis4 ± 10 of 4 0.00Down
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca14 ± 13 of 4 0.05Down
Mated spermatheca18 ± 34 of 4 0.06Down
Adult carcass8 ± 10 of 4 0.00Down
Larval CNS7 ± 24 of 4 0.02Down
Larval Salivary gland6 ± 21 of 4 0.02Down
Larval midgut4868 ± 3054 of 415.14Up
Larval tubule25 ± 152 of 4 0.10Down
Larval hindgut1401 ± 2474 of 4 4.36Up
Larval fat body6 ± 10 of 4 0.00Down
Larval trachea2 ± 10 of 4 0.01Down
Larval carcass3 ± 10 of 4 0.01Down
S2 cells (growing)6 ± 10 of 4 0.02Down
Whole fly321 ± 344 of 4

Looking for CG14120-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime